Is Your Child’s Microbiome Asking for Help? Here Are the Signs to Watch For

As parents, we’ve all been there—your child’s having tummy troubles again, their mood’s all over the place, or you’re on your third round of antibiotics in a year. And while it’s easy to brush it off as “just being a kid,” there could be something deeper going on: a disrupted gut microbiome.

Your child’s gut is so much more than a digestive system. It’s home to trillions of microbes that play a huge role in immune health, brain function, behavior, skin, sleep, and beyond. When that delicate ecosystem is off balance, it can show up in some surprising ways.

Let’s break down the red flags.


🚩 Signs Your Child’s Microbiome Might Need Support

1. Frequent Tummy Aches or Constipation

Kids with gut imbalance often complain of stomach pain, bloating, or irregular bowel movements. If your child is going days without a poop or experiencing discomfort after meals, it’s worth exploring deeper.

2. Chronic Skin Issues (Eczema, Rashes, Acne)

The gut-skin connection is real! Inflammation and dysbiosis (imbalance in the gut bacteria) can trigger skin flare-ups, even in young kids.

3. Mood Swings, Anxiety, or Behavioral Challenges

The gut and brain are in constant conversation. Imbalanced gut bacteria can impact neurotransmitter production, leading to emotional regulation issues, irritability, or even symptoms often mistaken for anxiety or ADHD.

4. Weakened Immunity or Frequent Illness

If your child seems to catch everything and take longer to recover, their microbiome may not be providing the immune support it should. Roughly 70% of the immune system lives in the gut!

5. Food Sensitivities or Picky Eating

A damaged or leaky gut lining can lead to new sensitivities and inflammation after eating. Or, your child may start avoiding foods altogether because they “just don’t feel good” after meals.

6. Yeast Overgrowth (Thrush, Diaper Rashes, Sugar Cravings)

Candida or yeast overgrowth in the gut is common in kids who’ve had multiple rounds of antibiotics. It can cause rashes, fatigue, behavioral changes, and intense cravings for carbs and sugar.


🧠 What Causes Microbiome Imbalance in Kids?

There’s no one-size-fits-all answer, but common contributors include:

  • C-sections or lack of early microbial exposure
  • Frequent antibiotic use
  • High sugar and processed food intake
  • Poor sleep
  • Environmental toxins
  • Stress (yes—even in kids!)

The good news? The gut is resilient. With the right support, your child’s microbiome can recover and thrive.


🌿 How Well-Rooted Pediatrics Can Help

At Well-Rooted Pediatrics, we take a root-cause approach to gut health—no guesswork, no cookie-cutter treatments. We use advanced testing to assess the microbiome, inflammation, and digestive function, and we create a personalized plan to restore balance through nutrition, lifestyle, and targeted natural support.

We help your child feel better from the inside out—and empower you with the tools and knowledge to support them every step of the way.


💚 Let’s Get to the Root of It

If something feels off with your child’s health, trust your gut—and theirs. We’re here to help uncover the root cause and support true, lasting wellness.

📞 Call us at 815-322-9300 to schedule a visit
📍 Serving families in Crystal Lake & Oakbrook, IL
🌎 Telehealth available in IL, WI, IA, FL, ND, AZ, OR, MD, & MA + NY coming soon!

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Best pediatrician out there! I trust well rooted more than any nurse or doctor out there. Getting to the root cause of issues and always taking such good care of my son.

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Jessica, since we started seeing you I loved how you’ve always fought for our daughter’s. You’ve seen us thru some scary times but ALWAYS place our daughter’s first and that’s why when you moved we decided to follow you. You’re awesome and my daughter’s don’t trust anyone else but you. Continue doing you Jessica, you’re awesome!

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We are new patients at Well-Rooted. We were greeted by the friendly receptionist who answered all our questions. Even though it’s a temporary location, it was very well organized and clean. We saw Allison for our visit. She was knowledgeable, friendly and took the time to listen and answer any of our questions. She put our children at ease and made the appointment very easy. We are so grateful for this pediatric office and look forward to building a relationship with the staff!

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They healed my daughter’s eczema in 2 weeks (by finding the root cause, her leaky gut!) which regular doctors haven’t been able to do for 5 years! We love well-rooted!!

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